Protein Info for PS417_17130 in Pseudomonas simiae WCS417

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 56 to 75 (20 residues), see Phobius details amino acids 82 to 122 (41 residues), see Phobius details amino acids 142 to 165 (24 residues), see Phobius details amino acids 171 to 192 (22 residues), see Phobius details amino acids 237 to 260 (24 residues), see Phobius details amino acids 273 to 295 (23 residues), see Phobius details amino acids 307 to 325 (19 residues), see Phobius details amino acids 331 to 348 (18 residues), see Phobius details amino acids 367 to 388 (22 residues), see Phobius details amino acids 394 to 415 (22 residues), see Phobius details signal peptide" amino acids 30 to 33 (4 residues), see Phobius details PF07690: MFS_1" amino acids 20 to 384 (365 residues), 148.2 bits, see alignment E=3.1e-47 PF00083: Sugar_tr" amino acids 50 to 197 (148 residues), 24.2 bits, see alignment E=1.5e-09

Best Hits

KEGG orthology group: None (inferred from 84% identity to pfo:Pfl01_3680)

Predicted SEED Role

"Glycerol-3-phosphate transporter" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UMX5 at UniProt or InterPro

Protein Sequence (441 amino acids)

>PS417_17130 MFS transporter (Pseudomonas simiae WCS417)
MNIPMGSIKRWRVQIFAITWLAYAAFYFTRKAFSVAKLGIGDDPSFPLDKMMMANLDGLY
LAAYAVGQFTWGMLADRFGPRVVVLGGLLISAAAALVMGTFATLPIFVTCMLIQGLAQST
GWSGLCKNLGSFFPAQQRGRVLGLWSSCYAFGGLVASPFAGWWAYTLIGSWHAAFISSAV
VVALVALLFFIFQRNTPQDVGLPAVEPEPALSAEEAAAEKRISVLEPLRAILRNRTVLTL
GLAYFLLKPARYAILLWGPVIVYEQMPSVGKVGAAIVPTAFELAGLLGPVLIGLASDKLF
GARRMPACVLSLLALTVALALFMGALHTGSVVLVMALLFVMGLTLYGPDSMISSTAAIDF
GTAKAGATAAGFVNGCGSVGAILGGLLPGYFDTVTVFIVFAGAALFSSLVLMPYWNARPA
VLAQVGDFVPDCNVAVKPLRT