Protein Info for GFF3342 in Sphingobium sp. HT1-2

Annotation: Putative phosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 628 PF05787: PhoX" amino acids 89 to 600 (512 residues), 433.2 bits, see alignment E=1e-133

Best Hits

KEGG orthology group: K07093, (no description) (inferred from 63% identity to reh:H16_A0369)

Predicted SEED Role

"Putative phosphatase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (628 amino acids)

>GFF3342 Putative phosphatase (Sphingobium sp. HT1-2)
MSHLTDEARAAFRDAQPKIVSGEDSLEAIVAANPGRRSVLKNGLLGLSVLPMLGALAACD
DDDDDSTPAPTPTPTPTPTPTPTPSYGINFTSVAINTNDTVTVPSGYTVDVLLKAGDLVE
AGTAFANGTFPTSVSQTAAWAGGNHDGMEYFELTGTDANSGGLLAINFELPDYNILFSSG
SYNASTATADQKAIALSAVGIAVVEVTKGTDGKFAVKAGSKYNKRYSGNTDYRVGGPAAG
VLPGTIRGMLNNCSSGRTPWGTYLTCEETTNNYLDPTQPNTSYGWVVEIDPFQELAPATK
RTALGRFSHENVAHMTDANNRVAFYMGDDSTPGCVYKFVPDRAFSSSNRAANTDLLDYGT
LYVARFNADGTGEWRPLVQGQNGLVAGAQDPGNVSQSTTPPTPTTVNFTNQADVLVNTQS
AARVAGGTIMDRPEWITVAPNKQAIFVTLTNNSGRRVTDAADPRVTNLHGHILKFRENGD
SPLATAFTWEIFLLAGNPALAEDNLKGNISGDYFSSPDGIRIDPQGRLWVQTDHNLTGNA
GTLNGAATNMTGAFGNNSMYYIDQTSKQSKRFLVGPAGCEITGIAYTPDLKNFFINIQHP
TGNWPVAGQQPRSSTIVVRRTDGQPVGN