Protein Info for GFF3328 in Sphingobium sp. HT1-2

Annotation: Zinc finger-containing protein CC2215

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 transmembrane" amino acids 152 to 174 (23 residues), see Phobius details PF13717: Zn_ribbon_4" amino acids 1 to 36 (36 residues), 46.9 bits, see alignment 1e-16 TIGR02098: MJ0042 family finger-like domain" amino acids 1 to 35 (35 residues), 53.2 bits, see alignment 8.9e-19

Best Hits

KEGG orthology group: None (inferred from 69% identity to sch:Sphch_2355)

Predicted SEED Role

"FIG01260484: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (285 amino acids)

>GFF3328 Zinc finger-containing protein CC2215 (Sphingobium sp. HT1-2)
MILVCPNCATRYIVPDTAVGPDGRQVRCAACKHSWFQEGPAPAPREEAPEPVAPAPVAPP
PAPPPPPPPPPVEAAPAEAPMRFTPGPEPEAVAPAQPEAAAPPPVEPAAEPTPAIAPDYR
FDDIYAGVSQPAEEVPPPPSLPAKRRRNGAKLLTWAAVLFFLLVAAAGAALHYFGPPAWA
VNMGLVAEEGDPDLLFYLSKPAERRKLPTGEEYFAFGARIVNSGKQALPVPPVLVQLRDR
QNRLVFSWTTKADKARLKPGEEASINESRIDIPKNAENLSLTFVE