Protein Info for PS417_16960 in Pseudomonas simiae WCS417

Annotation: fimbrial protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 828 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF13954: PapC_N" amino acids 29 to 175 (147 residues), 143 bits, see alignment E=1e-45 PF00577: Usher" amino acids 192 to 738 (547 residues), 542.9 bits, see alignment E=1.6e-166 PF13953: PapC_C" amino acids 751 to 809 (59 residues), 34.6 bits, see alignment 2e-12

Best Hits

KEGG orthology group: K07347, outer membrane usher protein (inferred from 83% identity to pfl:PFL_3924)

Predicted SEED Role

"Outer membrane usher protein FIMD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U0T5 at UniProt or InterPro

Protein Sequence (828 amino acids)

>PS417_16960 fimbrial protein (Pseudomonas simiae WCS417)
MFLFKRDSLAPLLIAVGFSSVCHADGDEHFNTSFLQGAAASVDLQSLLASSSVLPGNYRV
DLYGNDTLVGRRDIDFRRNPSNGRVEACLTLEMLQQVGVDIGALQANGKLVDTDPNACLD
LPALIEHASVRYDVPRLRLLVSVPQRAMERGRRGYVDPALWDDGVPAAFMNYQLSSNRSS
NDANTTLSNNLGLRNGINLGGWRLRNESNFSSSTGRSSTFKSNRSYLQHDLTALKGQFSA
GDIFSDADLFDSVRYRGLKMASDDGMRADSERGYAPIIRGVAQSSATVEIRQNNYILYTA
NVPPGPFEISDIYPSGSNGDLEVTVIEADGRRRVTVQAFSSLPIMVREGQVKYSLSAGQY
NSNSDGQKTPQFVSSTLAYGISSNLSGIVGVQATQDFQALSVGAGRNTSIGAVSLDMTHS
ASRTFGRQVTGNSLRALYAKTFTGTDTNFTLAAYRYSTEGYRTLTEHVEELSSDGRTHLG
NSKTRTDLTVNQSLGRNQQFGSVYLNASDQRYWGRGGAQSLSAGYSNYWRDVTYNLSATH
TKDVGNYGPSNNDTLINLSLSFPLGSKPRAPRAFVSASTQKDNDTTQMGVNGYLTEDSNT
YYSLQAGNSSTGGSTGSANLSTRTALMDISGGYSQGRGYSAQNLNVAGSVVAHAGGINLG
QTVGETFALAQVEGVPGVKISSFSGARTGSNGYAVIPNTQPYRVNWISLDTRDLGADIEI
DNATQQVVPRRGAVVLARYASKSGRRVQFALFDAQHRPIPFGASLESMAGKQMAIADPGG
KALALVEEDTGTLVIKWADQHCQAPYALGERNKALNYERVALTCAPNP