Protein Info for PS417_01680 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1023 signal peptide" amino acids 1 to 14 (14 residues), see Phobius details transmembrane" amino acids 23 to 41 (19 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 189 to 206 (18 residues), see Phobius details amino acids 213 to 235 (23 residues), see Phobius details amino acids 241 to 260 (20 residues), see Phobius details amino acids 265 to 284 (20 residues), see Phobius details amino acids 290 to 309 (20 residues), see Phobius details amino acids 314 to 333 (20 residues), see Phobius details amino acids 344 to 362 (19 residues), see Phobius details amino acids 391 to 411 (21 residues), see Phobius details amino acids 417 to 437 (21 residues), see Phobius details amino acids 443 to 463 (21 residues), see Phobius details amino acids 469 to 486 (18 residues), see Phobius details amino acids 493 to 510 (18 residues), see Phobius details amino acids 524 to 542 (19 residues), see Phobius details amino acids 555 to 575 (21 residues), see Phobius details amino acids 581 to 597 (17 residues), see Phobius details amino acids 604 to 621 (18 residues), see Phobius details amino acids 627 to 644 (18 residues), see Phobius details amino acids 651 to 670 (20 residues), see Phobius details amino acids 676 to 697 (22 residues), see Phobius details amino acids 703 to 724 (22 residues), see Phobius details amino acids 731 to 750 (20 residues), see Phobius details amino acids 762 to 784 (23 residues), see Phobius details amino acids 797 to 816 (20 residues), see Phobius details amino acids 829 to 849 (21 residues), see Phobius details amino acids 862 to 881 (20 residues), see Phobius details amino acids 893 to 914 (22 residues), see Phobius details amino acids 934 to 954 (21 residues), see Phobius details amino acids 963 to 981 (19 residues), see Phobius details amino acids 989 to 1009 (21 residues), see Phobius details PF10101: DUF2339" amino acids 154 to 507 (354 residues), 369.9 bits, see alignment E=1.8e-114 amino acids 526 to 1012 (487 residues), 206 bits, see alignment E=6.9e-65

Best Hits

Predicted SEED Role

"FIG00955932: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UBI5 at UniProt or InterPro

Protein Sequence (1023 amino acids)

>PS417_01680 membrane protein (Pseudomonas simiae WCS417)
MQWIFMLIGLVLGWTLDESFSDAGIGALLGLGIGQAIRLAQLSAQADKQARQLDTTQKSL
IALGERLRQLEVPAPASSVKVEPSVPESAPVAKPPELVWELPAELAPVARGAEPSQPLPD
DVWAPAPTPKEPVIPRGPNLIERAIEGARNWLFGGNTVLRVGVVLLFLGLAFLLRYATEG
MVVPIELRYAGVAAAALGLLGLGWWLRLRNGNYGLMLQGAGIAVLYLTVFAAMRLHPLID
PGAAMGLLVAVTVCSAILAITQDAIGLACAAALGGFAAPILVSTGAGSHVALFSYFALLN
AGILTIAWFKAWRLLNVIGFVGTFGIGFAWGMRAYTPELLWSTEPFLILFFLMYLAIGLL
FARRKLLETQDAPEDASRGAQLRWSAAKGDYVDGTLLFGPPLVGFGLQFALVQHLEFAAA
FSALGLGIIYIVLARVLSGGRALLLTETYLALGVIFASLAIPLGLDARWTAAAWAVEGAG
IFWLGLRQHRPVARAFALLLQLGSLLAFLGELRDGQDTLLQGPPLGALLLGAALLFSFYQ
IHNAAPQQTRRWERLGAPGLAVLGLGCAYLLAPLLFSTQGSIVSWSVAGLATVWAGLRIG
SPWVVRCGVAVQVLAGALFALDPVNNAWTPLIIALAAMLGAWCLPRGRLSAGLLAWGVAW
WALAVIIEVWRLAPAALHASLLVLAAALSVVIWTALALRLRWAALGIASTLLMPAVGLVL
LGAWTEYYHPAAQFGWLAWWVVFVVHFISLRHLSAVVPGKVLSAAHVLGCWMLIGVLALE
LRYGLLVLSSEYNAWRWLGWAILPSLYLVLAAAPRHWPWPVSAYPREYRVFAALPLAVLM
LGWFWLANIFSDGMAKPLPYVPLLNPLDLGLLFALLGIYLWSRSAAPERGPRVELIAQGV
AGISLFAFFTALVMRTAHHWGGVPFHLDALLESMLVQAGLSIVWTLIALGLMIGGHLRHR
REVWLIGAALIAVVVAKLFFVELSNRGGLARIVSFIGVGGLLLVVGYFAPLPPKRVEPEG
ASS