Protein Info for GFF3283 in Variovorax sp. SCN45

Annotation: ClpB protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1067 PF07724: AAA_2" amino acids 474 to 634 (161 residues), 131.5 bits, see alignment E=9.5e-42 PF07728: AAA_5" amino acids 479 to 577 (99 residues), 30 bits, see alignment E=1.4e-10 PF00004: AAA" amino acids 479 to 558 (80 residues), 26 bits, see alignment 3.4e-09 PF10431: ClpB_D2-small" amino acids 659 to 711 (53 residues), 28.9 bits, see alignment 2.8e-10

Best Hits

Predicted SEED Role

"ClpB protein" in subsystem Protein chaperones or Proteolysis in bacteria, ATP-dependent

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1067 amino acids)

>GFF3283 ClpB protein (Variovorax sp. SCN45)
VAGDTVVTSLAFPEMAWLGSSAHAMARRMAQAVQSHLIDKGRYLEAVQISDPPAFERHEF
DVDLPGGSDPLLHPPRRCHHVAFLSSGPANTPCIGYVPALGIVALAEAERLREAVSEAIV
LEHRRAGRQTDVRRQVAAQWFEQVELTQLPLDLVFHSAEALRKLKDDRAKPLLPTVADEM
SVGSRTAIGLAVPLTALQRAAEGRFARSVLVVGAESSGKTALIHQYARERRDRAAGSPWE
TSAARLIQGLTRDGSWQQALTTLCRELATREVVLYVGHLAELFEVGQYQGNSISLGDALR
EPLARGQLMVLAEATPAELSQIDLRSPGFSALFQTLRLPELPEAEQERTMLAAVAALAAQ
HRVAVSPDAVSELIALQRRFSPYSGFPGKGIRFFEELILHVRGQQGAVIGRDDALAAFCA
ETGMPRRMLDARLPLSLDEVDGFFRSRLFGQPEALSVVTNLLVATKAGLARGGKPIASML
LIGPTGVGKTETAKALAEFMFGDPRRMIRIDMSEYADPAAVLRLLGDLGGDEGVLIGAVR
RQPFSVVLFDELEKAHPSFFDLLLQVLGEGRLTGGDGLTANFCGSFVVMTSNLGAEAMQR
MPMGLGAVRGDPRAHFEQAVQQALRPELFNRIDHIVPFAPLSATERAPIFGREMTLLRKR
EGLLERSAELTLDDDVAARLAALPGDERYGARDVQRVLRRQLLLPLAHALAPHAYVTPLA
VRIGAGDTGQPLGVRADPLQRPVDNAPLLAAEALADARRHWQRVTEGPLFVNLVNQVFRL
DDERRRYEKKRNRAPHLPHWDGTPSASRARTLAAVQQTAQGLFAEIMTLEGQALLALVGE
SDAPPDIAAWRTRFTAFKQQAFHAVRPDSGVCTVGLYAAPALATTLHDAWCELAALAGFE
FRPQVVRLGDEPRKPAPPADAEAREEKREEKSEDEAPPSPYLKFPWPQASSRKSLIVGFE
IELKGPAVFDYFRQEGGVWRIWVGDRNKSDAWVSVRSGTLSNFETPHNVHRQHFFDSRPV
HRFLRDGMLAAQQADWKTSFPDAPAWKRALDAQFDALMDRMLLGEDD