Protein Info for GFF3282 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 589 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 78 to 97 (20 residues), see Phobius details amino acids 102 to 126 (25 residues), see Phobius details amino acids 132 to 152 (21 residues), see Phobius details amino acids 162 to 178 (17 residues), see Phobius details amino acids 190 to 213 (24 residues), see Phobius details amino acids 225 to 244 (20 residues), see Phobius details amino acids 257 to 276 (20 residues), see Phobius details amino acids 288 to 306 (19 residues), see Phobius details amino acids 341 to 362 (22 residues), see Phobius details amino acids 374 to 392 (19 residues), see Phobius details amino acids 398 to 415 (18 residues), see Phobius details amino acids 426 to 448 (23 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 62% identity to sjp:SJA_C1-03050)

Predicted SEED Role

"Mlr4739 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (589 amino acids)

>GFF3282 hypothetical protein (Sphingobium sp. HT1-2)
MAFSRAVERHGRWLILLAWLACSAVMLWLFHGDFAALGFRDPDDAMRLVQVRDWIGGQNF
WDVSQHRVNPPLGGPMHWSRIVDMPVAGLIPLARPLLGPVAAELVACITVPLLLLGGLAG
TVHLAARRLGDAVLALVAVALLLTTPSILVQFTPLRIDHHGWQIWMATIALAGALHSGRV
RGGVTSALALAVWLQISSEALPYVALFAGLFALRQWIDGREASRFMAFAATLGGAALALL
ALLRGQTALLHSQCDALSAAYVWPLVAMAVLVPLAGKLIGTASMTRRFLIAAIGGGAAIA
ILLAIGSPCLSGDPFQALGPLAYKYWYLQVMEGRPIWVQSLSLRGVILLPALVGLAGVMV
AARQTVNRDARMRWLALGLLLLGAMAVSLLVMRAVSVAHVYALPGVAWLLIALFRKVQAS
SQALVRVLGSVALILLTPAGICALWIALIPEAPSAKTSAVNCRAAATLAPLHTLPPSTLF
APLDLGPDILVQMPHRVIGTAHHRNAAGITAVIEGFMATPEKARAVIRSVNGGRGADYVV
TCAGLTEYALYAKEHPQSLSAQLTRSNVPDWLQPLPTKGPLRIYKVRRD