Protein Info for PS417_16765 in Pseudomonas simiae WCS417

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF13533: Biotin_lipoyl_2" amino acids 62 to 102 (41 residues), 32.2 bits, see alignment 1.4e-11 PF13437: HlyD_3" amino acids 63 to 120 (58 residues), 26.4 bits, see alignment E=1.9e-09 amino acids 241 to 335 (95 residues), 37.4 bits, see alignment E=7.6e-13 PF16576: HlyD_D23" amino acids 178 to 312 (135 residues), 36.6 bits, see alignment E=6.1e-13

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfs:PFLU3850)

Predicted SEED Role

"Probable RND efflux membrane fusion protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U8B8 at UniProt or InterPro

Protein Sequence (415 amino acids)

>PS417_16765 transporter (Pseudomonas simiae WCS417)
MTTNQKRLLGAVLILLLGGAVLTLRSPASDPVGTQEQWQAVKPEALVHQIGLVGKIEPDT
TITLTAPFDGNVQANLVEQGQRVEAGQVLLRMDPATLEVQLRDALSAQLKARRTVQEMQD
WDNGPTVTRARRSLRTVEMTAGNTQRKLTESENLFKRGIIPRNELDDLKQQTQQQQLDLA
SARSELQQAIDQGKGEYRQIADMELTNATVKYDALHKLLEGKEVKAPFSGIVVPPPGNNS
PQAGGNNTAPVQAGSKVSQGQVLFGLANIERLKIVAKVSELDINQLHQGQAVEVLGDGFD
GERLTGSVSVVSGLAIAGDSQGSAQFPVTLSIPKLTPQQLQRVRLGMSARLTIVTYNNAQ
AIVIPSQAIRADKTVEYREAMDKPSERVKVTTGQATAQGVEVFGLKPGFVKTNPL