Protein Info for GFF3267 in Variovorax sp. SCN45

Annotation: RNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 179 PF00076: RRM_1" amino acids 5 to 74 (70 residues), 77.3 bits, see alignment E=3.4e-26

Best Hits

Swiss-Prot: 51% identical to GRP10_BRANA: Glycine-rich RNA-binding protein 10 (GRP10) from Brassica napus

KEGG orthology group: None (inferred from 94% identity to vap:Vapar_5290)

Predicted SEED Role

"RNA-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (179 amino acids)

>GFF3267 RNA-binding protein (Variovorax sp. SCN45)
MGNKLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAA
INGMNGQPLGGRSVVVNEARPMEARPPRSGGGGGYGGGGGYGGGGGGGYGGGGGGGYGGG
GGGRSGGGGGYGGGGRSGGGGGGGDGGFRSPYGAGPRGGGGGGRSGGGGGYGGGGNSGY