Protein Info for GFF3264 in Xanthobacter sp. DMC5

Annotation: Carbamoyl-phosphate synthase large chain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1180 PF00289: Biotin_carb_N" amino acids 1 to 110 (110 residues), 142.3 bits, see alignment E=3.2e-45 TIGR02712: urea carboxylase" amino acids 2 to 1178 (1177 residues), 1795.2 bits, see alignment E=0 PF02786: CPSase_L_D2" amino acids 116 to 319 (204 residues), 223.7 bits, see alignment E=7.8e-70 PF07478: Dala_Dala_lig_C" amino acids 138 to 291 (154 residues), 38.8 bits, see alignment E=2.9e-13 PF02785: Biotin_carb_C" amino acids 336 to 440 (105 residues), 107.8 bits, see alignment E=1.3e-34 TIGR00724: biotin-dependent carboxylase uncharacterized domain" amino acids 449 to 746 (298 residues), 244.1 bits, see alignment E=1.8e-76 PF02626: CT_A_B" amino acids 472 to 744 (273 residues), 299.7 bits, see alignment E=9e-93 PF02682: CT_C_D" amino acids 782 to 1004 (223 residues), 134.3 bits, see alignment E=1.8e-42 PF00364: Biotin_lipoyl" amino acids 1117 to 1177 (61 residues), 50.5 bits, see alignment 6.1e-17

Best Hits

KEGG orthology group: K01941, urea carboxylase [EC: 6.3.4.6] (inferred from 82% identity to azc:AZC_4402)

Predicted SEED Role

"Urea carboxylase (EC 6.3.4.6)" in subsystem Urea decomposition (EC 6.3.4.6)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.3.4.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1180 amino acids)

>GFF3264 Carbamoyl-phosphate synthase large chain (Xanthobacter sp. DMC5)
MFSKILIANRGEIARRVIRTARAMGISSVAVHSDADRFTRGVLEADEAVRLGPAPAAESY
LNVDAVIAACKATGAQAVHPGYGFLSENVRFARRLAEEGIAFIGPKPEHLEAFGLKHTAR
ELAKASGVPLLPGTDLLDSAEEALAAAEAITYPVMLKSTAGGGGIGMQLCHTPDELKDVF
ERVQRTARASFGDARVYLERFVSEARHVEVQIFGDGKGRVVALGERDCSLQRRNQKVVEE
TPAPLLSDAVRARLHAAAVQLGESVRYESAGTVEFIYDPARQEFYFLEVNTRLQVEHPVT
EAVFGIDLVEWMIRQAAGEDPIASAGPLSPKGAAMEVRVYAEIPHANFQPSAGLLTEVKF
PDWARIDGWIETGTEVTPYYDPMLAKVIVKADDRPGAIAALQKALAETSIRGIETNLQYL
SAIAASDLLASGKVATTALKDFAFRPTSVEVVVPGAQSSLQELPGRLNLWHVGVPPSGPM
DEHSFRRANALVGNTQTACALEMTVNGPTLRFHDDATVALSGALMPARLDGAPVPHDAAF
PVKAGQMLAIGTIEGAGQRAYLAVAGAFQAPVVLGSRATFALGQFGGHATGTLKAGDALH
LAPASARPTGPATQVPTPAPLTRDWQIGVLYGPHGAPDFFQPDDIADLFSATYEVHFNSA
RTGVRLMGPTPRWARTDGGEAGLHPSNLHDNAYAIGAIDFTGDMPIILGPDGPSLGGFVC
PAVIARDEQWKMGQLKPGDRVRFIPLPRPEDPIAGPVLIGAPEETSSPILAIHEDGPVRV
VYRRQGDDNLLVEFGDMHLDVALRLRAHLMAEAVQAAKLPGLIDLTPGIRSLQIHYDGAS
LPRTKLLDALAEIEKGLPAAEDVVVPSRIVHLPLSWNDPQAELAMRKYQELVRPNAPWCP
DNIEFIRRINGLEDEQAVKDIIFGASYQVLGLGDVYLGAPVATPIDPRHRLVTTKYNPAR
TWTPENAVGIGGAYMCIYGMEGPGGYQLFGRTIQMWNTWRRTPAFRDTPWLLRFFDEIRF
FPVSHQELMEARAAFPHGAYPVRIEDSRFSYADYAANLAANAGAITAGKARQQAAFEAER
ARWKAEGLDSFVVEDGAGPFSEGEMPEGCFGVAANVPGNVWKVLVEEEAMVAAGDTIAII
ESMKMEISITAHAAGRVREIRAAPGRTVRSGDVVCVLETV