Protein Info for PS417_16700 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 PF05114: MbnB_TglH_ChrH" amino acids 11 to 270 (260 residues), 370.4 bits, see alignment E=2.3e-115

Best Hits

Swiss-Prot: 71% identical to Y4400_SPHWW: UPF0276 protein Swit_4400 (Swit_4400) from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)

KEGG orthology group: K09930, hypothetical protein (inferred from 70% identity to bgd:bgla_2g06310)

Predicted SEED Role

"Uncharacterized protein conserved in bacteria, NMA0228-like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UJK6 at UniProt or InterPro

Protein Sequence (274 amino acids)

>PS417_16700 hypothetical protein (Pseudomonas simiae WCS417)
MSTSNPHFSGYGLGLRKEHYCDFLETSVPVDFVEVISENFMVAGGQPRHILRQVRERYPV
ALHGVSMSIGTAEGLDADYLKRLKSLVDEVEPLFVSDHLSWSRSAGFNSHDLLPVPYTDE
ALDRVCANIQQAQDVLGRTMLFENPSSYLAFEGASMTEWEFIAAMAKRTGCELLLDVNNV
FVSASNHGFDALAFLNGLPAERVRQVHLAGHSQGREMLIDSHDSPVCTGVWELYAQAMTR
LGPVATMIERDDEIPPLAELLQELSMARTLGAQR