Protein Info for GFF3260 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 82 to 104 (23 residues), see Phobius details amino acids 111 to 135 (25 residues), see Phobius details amino acids 141 to 157 (17 residues), see Phobius details amino acids 198 to 217 (20 residues), see Phobius details amino acids 236 to 256 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 94 to 261 (168 residues), 76.7 bits, see alignment E=9.9e-26

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 90% identity to xau:Xaut_1226)

Predicted SEED Role

"Urea carboxylase-related ABC transporter, permease protein" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (270 amino acids)

>GFF3260 hypothetical protein (Xanthobacter sp. DMC5)
MRLINVRPDRGTALFLAVLPFALVVLAYILGSAERLAENPDDKLLPSLPSLGNAIVKMAF
TADARTGDYLLWTDTLASMERLLSALAIATIIALVIGVLVGMLPIVRALLAPFVAMVSMV
PPLALLPILFIVMGLGEESKIALITIGITPYLVRDLAMRVEELPREQMIKAQTLGASTWQ
MMVRVVLPQILPRLMDGLRLSLGPAFLFLIAAEAIASDSGLGYRIFLVRRYLAMDVILPY
VAWITLIAVAMDFGLARARRALFPWFGGAK