Protein Info for GFF3257 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 25 to 40 (16 residues), see Phobius details amino acids 52 to 81 (30 residues), see Phobius details amino acids 97 to 112 (16 residues), see Phobius details amino acids 133 to 153 (21 residues), see Phobius details amino acids 191 to 210 (20 residues), see Phobius details amino acids 213 to 244 (32 residues), see Phobius details amino acids 251 to 270 (20 residues), see Phobius details amino acids 285 to 313 (29 residues), see Phobius details PF01594: AI-2E_transport" amino acids 4 to 313 (310 residues), 108.4 bits, see alignment E=2.2e-35

Best Hits

KEGG orthology group: None (inferred from 82% identity to xau:Xaut_1228)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (341 amino acids)

>GFF3257 hypothetical protein (Xanthobacter sp. DMC5)
MRGLVGLAAAVVVFAALYVTGALLAPVAFALLVIAVVHPLLARLEAKLPKMVAVLGTLVI
TLAVVGAVSSVVVWGFSHVAAWVFQNASRFQRLYGEAAVWLEGHGFVLAGLWAEHFDVRW
LLRLFQDLSGRLQGMASFLVFTFIYVLLGLLEVEAMKSQVMRLSRSGRAPFLAPALADIA
RKMQTYMAVRTLMSIATGAVVWAFTLTAGLELALAWGAIAFALNYIPFIGPFVATLLPTL
FALAQFESWEMAVFVFVCLNVIQFLSGSYLEPRLAGKALAVSPVLVLFAVFFFAFLWGIA
GAFIGVPILIAGLTLCAHHPDTRFVAELFSGRVATEEAGQA