Protein Info for GFF3255 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 PF06793: UPF0262" amino acids 11 to 164 (154 residues), 239.6 bits, see alignment E=7.1e-76

Best Hits

Swiss-Prot: 87% identical to Y1232_XANP2: UPF0262 protein Xaut_1232 (Xaut_1232) from Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)

KEGG orthology group: None (inferred from 87% identity to xau:Xaut_1232)

Predicted SEED Role

"FIG00450475: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (165 amino acids)

>GFF3255 hypothetical protein (Xanthobacter sp. DMC5)
MSDKPETKPSARLSAVTLDDASIGHAGSPDIEHERATAIWDLIEDNSFLPCNDPGEGPYQ
LFISLADNRLVLDIKRESGDQVVQHHLSLTPFRKVVKDYFLICESYYNAIRTASPSQIEA
IDMGRRGLHNEGSTLLQERLNGKVVVDFDTARRLFTLICALHWKG