Protein Info for GFF3249 in Xanthobacter sp. DMC5

Annotation: High-affinity branched-chain amino acid transport system permease protein LivH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 transmembrane" amino acids 15 to 61 (47 residues), see Phobius details amino acids 67 to 106 (40 residues), see Phobius details amino acids 118 to 143 (26 residues), see Phobius details amino acids 163 to 183 (21 residues), see Phobius details amino acids 204 to 234 (31 residues), see Phobius details amino acids 246 to 274 (29 residues), see Phobius details amino acids 292 to 317 (26 residues), see Phobius details PF02653: BPD_transp_2" amino acids 31 to 291 (261 residues), 108.5 bits, see alignment E=1.7e-35

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 67% identity to azc:AZC_3192)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (327 amino acids)

>GFF3249 High-affinity branched-chain amino acid transport system permease protein LivH (Xanthobacter sp. DMC5)
MTVLKRWRILLEPSRSSLAPLMTLTLFLVQMLNGLQLGILLFLVAAGLTLVFGVMDVINL
AHGVQYMLGAYLMVTATALTGSFWLGLPLALAAALVLGLLLERLVIRQLYGRDHLDQVLA
TFGIILFVSEAVRMVWGSAPLAIPMPQALSGSVRLMDGLNYPVYRLVLIGAGLGVAGLLY
VLVTRTRAGMLLRAGATNAPMVSALGVDITALFARIFAFGAMLAAFAGAMAGPILSVEPG
MGDNLLILAFVVIVIGGIGSMRGAFVAALLVGLIDTLGRSFLTDILKLVMSASAASAAGP
ALASMSVYVLMAAILFFRPRGLFPAPA