Protein Info for GFF3247 in Variovorax sp. SCN45

Annotation: FIG027190: Putative transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 349 PF13421: Band_7_1" amino acids 27 to 235 (209 residues), 257.1 bits, see alignment E=1.9e-80 PF01145: Band_7" amino acids 43 to 231 (189 residues), 68.7 bits, see alignment E=1e-22 PF09851: SHOCT" amino acids 319 to 345 (27 residues), 34 bits, see alignment (E = 2.8e-12)

Best Hits

KEGG orthology group: None (inferred from 99% identity to vpe:Varpa_5990)

Predicted SEED Role

"FIG027190: Putative transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (349 amino acids)

>GFF3247 FIG027190: Putative transmembrane protein (Variovorax sp. SCN45)
MALMDFIKKQFIDIIQWTETGDGTLAWRFPMADMEIQNGGSLTVRESQVAVFVNEGKVAD
VFGPGMYKLTTQTLPVLTYLKNWDKLFESPFKSDVYFFSTRQQVDQKWGTPQPITIRDKD
FGAVRLRAFGNYSFRIGDAKLFHTEISGTRDIYSVADLDGQLRGLVLQNISNAIASSGVP
FLDLAANQIQFAQALAAQLVPEFEKIGIKLENITVQNVSLPEELQKILDQKIGMGMVGND
MGKFMQYQTAQAIPKFAEGAAGGGGIAGDAMGLGAGVALGQVLAQNLAQGLSPNAAAQAA
ATQQQPAVAVVSPTDVMTTLEKLGELKTKGILTQEEFDAKKAELLKKLV