Protein Info for GFF3236 in Xanthobacter sp. DMC5

Annotation: Oxalate:formate antiporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 transmembrane" amino acids 14 to 32 (19 residues), see Phobius details amino acids 51 to 69 (19 residues), see Phobius details amino acids 81 to 100 (20 residues), see Phobius details amino acids 106 to 128 (23 residues), see Phobius details amino acids 138 to 159 (22 residues), see Phobius details amino acids 171 to 190 (20 residues), see Phobius details amino acids 220 to 246 (27 residues), see Phobius details amino acids 258 to 276 (19 residues), see Phobius details amino acids 297 to 314 (18 residues), see Phobius details amino acids 320 to 343 (24 residues), see Phobius details amino acids 355 to 376 (22 residues), see Phobius details amino acids 385 to 405 (21 residues), see Phobius details TIGR04259: oxalate/formate antiporter" amino acids 13 to 417 (405 residues), 648.5 bits, see alignment E=2e-199 PF07690: MFS_1" amino acids 23 to 271 (249 residues), 88.4 bits, see alignment E=2.3e-29 amino acids 275 to 414 (140 residues), 45.8 bits, see alignment E=2.1e-16

Best Hits

KEGG orthology group: None (inferred from 94% identity to xau:Xaut_1247)

Predicted SEED Role

"Oxalate/formate antiporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (431 amino acids)

>GFF3236 Oxalate:formate antiporter (Xanthobacter sp. DMC5)
MSEMAVKAPATNRWLQLIAGVVCMVAAANIQYSWTLFVPEIVSTHGWTRASVQVAFTVFV
VVQTWLTPIEGYFIDKYGPRVMVLVGGFFTGLSWVMNSYAGSLTALYVAAALGGIGVGCV
YATCVNAALKWFPDRRGLAVGLTAAGYGSGTVLTILPIAAMIKSSGYQETFFTFGLVQGA
VIMLAAGFLRAPSKTEVIFSSTVAQSRRDYTLGEALRTPVFYVMLTMFVLTVSGGLMAVA
QLGVIAEDLGVKHINVDLYFFAMAALPFALMLDRILNGFSRPFFGWISDHIGREKTMFFA
FALEGIGIVALGTFGTNPWAFIILSGVVFLAWGEVYSLFSATAADTFGSKHIGKIYGMLY
TAKGFAALLVPLANLLMEATGTWTTVLYTVAAMDLTAAFAALFVLRPMLARHHRLNAEAA
ASATATRQATA