Protein Info for GFF3231 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Gifsy-2 prophage protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 PF02586: SRAP" amino acids 1 to 178 (178 residues), 153.8 bits, see alignment E=2.6e-49

Best Hits

Swiss-Prot: 85% identical to YEDK_ECOLI: SOS response-associated protein YedK (yedK) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to sei:SPC_2696)

MetaCyc: 85% identical to genome maintenance protein (Escherichia coli K-12 substr. MG1655)
RXN-21016

Predicted SEED Role

"Gifsy-2 prophage protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (208 amino acids)

>GFF3231 Gifsy-2 prophage protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MCGRFAQAQTREEYLAYLADEADRNIAYDPQPIGRYNVAPGTKVLLLSERDEQLHLDPVI
WGYAPGWWDKAPLINARVATAASSRMFKPLWQHGRAICFADRWFEWKKEGDKKQPYFIHR
KDGKPIFMAAIGSTPFERGDEAEGFLIVTSAADKGLVDIHDRRPLALTPETARVWMRQFL
EPHSKSITYRVIPALTRPMMRKDTNPCQ