Protein Info for GFF3226 in Sphingobium sp. HT1-2

Annotation: Serine recombinase, PinQ/PinR-type

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 231 PF00239: Resolvase" amino acids 43 to 183 (141 residues), 124.1 bits, see alignment E=5.2e-40 PF02796: HTH_7" amino acids 186 to 226 (41 residues), 24.8 bits, see alignment 1.9e-09

Best Hits

Swiss-Prot: 65% identical to TNR0_ECOLX: Transposon Tn2501 resolvase (tnpR) from Escherichia coli

KEGG orthology group: K14060, putative DNA-invertase from lambdoid prophage Rac (inferred from 79% identity to sch:Sphch_2407)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (231 amino acids)

>GFF3226 Serine recombinase, PinQ/PinR-type (Sphingobium sp. HT1-2)
LHLICPFPIHLCNLYRKIDSTYIRYLDSFEPLIRYGDNEMSRAFAYCRVSTGDQTTENQV
REITAAGFAVEGRRIVSETVSGSVAAMERKGFAELMRRLEDGDILIVTKLDRLGRNAMDV
RATVELLAAEGVRVHCLALGGVDLCSAAGKMTMGVIAAVAEFERDLLIERTQSGLKRAKA
AGKVLGRPQALTPDQQKDIITRRGQGASLGVLAKEYKVSRAAIQRVEKRTA