Protein Info for GFF3208 in Variovorax sp. SCN45

Annotation: Transposon Tn7 transposition protein tnsB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 756 transmembrane" amino acids 352 to 372 (21 residues), see Phobius details PF09299: Mu-transpos_C" amino acids 556 to 614 (59 residues), 28.6 bits, see alignment 5.8e-11

Best Hits

Predicted SEED Role

"Transposon Tn7 transposition protein tnsB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (756 amino acids)

>GFF3208 Transposon Tn7 transposition protein tnsB (Variovorax sp. SCN45)
MSPLLTNDILVYPDGGQRLRLLRLHEVVRPEPPGANQDEQPQPSETKVASIWFVIDIDAP
HALPFGKDSQELTNDLLAGTAHLLMPDPFLRSNGGKPWKKSLIKLRDRAWALIKDLVQQI
QIFFPRERSVLVQSRIGKKSEGKATKPTLYGHLRRYWQRGQTPNALLPDYQNCGAKGVVR
PCTPDSPKRGRPRIYGDEIGINAHKAIRNVFKAAIQRYGKENAFTLPGIYDDMVEKFFTK
QEVDPETGEIRYLPKGIASGAANESGIPDSDPKESGIPTFGEFKYWFYREGDSLNLKRRR
VGARVYDKDLRGYTGTATTGVWGPGARYVIDATIADVYVVSRLNRRRIVGRPVLYVVIDT
FSRMIVGIYIGLEGPSWVGAMMALANAAADKVAFCAKYGIAIKQEDWPCQHLCTYLLGDR
GEMESHHVDVLSANFNIMIENAAAYRADWKGIVESRFLLLPAKFKPYTPGYIKPDYRVRG
GNDYRLDAVLDLDDFTRIFIACVLRFNNHHELAEYDPDRGVLADAVKPVPLDLWNWGIVH
RSGSLRRYPEELVKFSLMPTGKASVTTEGIKFQGAFYSGERAMAQRWFDQARQGKGRVVD
VSYDPRGMDEIYIHGDEPMAFDTCSMTDRSRALRGLSLQEIDEALTLSANNSANHRTEAQ
MATSRMIGVINSTVEAALAKQPPPDGESDHSRVSNIRENRAQEKDDRRAEERFRLGATAN
QAARPAKTTVLPFLKDRRNDYDEPDITELDTDGAQP