Protein Info for GFF3198 in Sphingobium sp. HT1-2

Annotation: Inner membrane protein YqiK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 571 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details PF15975: Flot" amino acids 410 to 536 (127 residues), 143.7 bits, see alignment E=1.6e-46

Best Hits

KEGG orthology group: None (inferred from 80% identity to swi:Swit_0005)

Predicted SEED Role

"Inner membrane protein YqiK"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (571 amino acids)

>GFF3198 Inner membrane protein YqiK (Sphingobium sp. HT1-2)
MNLPAVQESFSILPYAMIAGSGLLVLIVLGIVIARLYKRASKEIGFVRTGFGGEKVVMNG
GALVLPIFHETMPVNMNTVRLAVERKNSDALITLDRLRIDVKAEFYVRVKPDAQSIATAA
QTLGMRTMNPEALKELVEGKFVDALRSVAAGMTMNQLHEQRGDFVQKVQQVSSVDLAMNG
LELESVSLTGLDQTSIEHFNANNAFDAEGLTKLTEQIELRKKSRNDIEQETRVQIETKNL
EAERQSLLIARDAEFARLEQEREVEMRRAAQIAEVAREQSLRSQEADQARIEAKKLVDSQ
QIEADRAVQQAKIAQAQALELARQEQQIAVQNKSREESQAKAEADEARAKAVAAEEQVQT
SRATEIAERTKRIELIDAAREAERAAIQIRVEAEAEKQAAADRAEALRVAAEGEAEAAKL
RAEADRVRFEVEAAGQRAVNEAANLLSSDQMSLQTKLALLKVLPDLVREAAKPMESIDSI
KIVQVDGLTGQGGGAGADGLVSAGGDQNLASAAVSAALRYRAQAPVIDGLMKELGLDGSS
LDSLVKSAVDPAPVAPVIVEKILPKKDQPQD