Protein Info for GFF3193 in Xanthobacter sp. DMC5

Annotation: Cytosine deaminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF07969: Amidohydro_3
  • amino acids 39 to 124 (86 residues), 38.7 bits, E=8.9e-14
  • amino acids 152 to 374 (223 residues), 82.4 bits, E=5.1e-27
• PF01979: Amidohydro_1
  • amino acids 48 to 394 (347 residues), 81.8 bits, E=5.8e-27

Best Hits

KEGG orthology group: K01485, cytosine deaminase [EC: 3.5.4.1] (inferred from 95% identity to xau:Xaut_4058)

Predicted SEED Role

"Cytosine deaminase (EC 3.5.4.1)" (EC 3.5.4.1)

MetaCyc Pathways

• pyrimidine nucleobases salvage II (1/2 steps found)
• pyrimidine ribonucleosides salvage III (1/2 steps found)

KEGG Metabolic Maps

• Arginine and proline metabolism
• Pyrimidine metabolism

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.5.4.1

Protein Sequence (413 amino acids)

>GFF3193 Cytosine deaminase (Xanthobacter sp. DMC5)
MDLIVKNARLPDAPDHIVDIAVAAGRIKAIAPDITADAEVVDAEGCLVAPGFVETHIHLD
KSCILDRCASRRGDLEEAIAEVARAKKDFTPEDVYARGRRTIEKAIAQGTTHMRTHLEVD
PGIGLRGFEGVMRLVEDYRWAMDIEVCVFPQEGLTNNPGTDELMVEALRRGAKAVGAAPY
TDTDPHGQIDRVFEMARDFDVDIDMHLDFGADPTALDLDYVCTLTERFGWGGRVAIGHVT
KLAYVEPERLAQIATRMGDCGVALTVLPSTDLFLMGRDRAFAKTRGVTPAHLLLQHGVNC
SLSTNNVLNPFTPFGDCSQLRMANLNANICHVGSAHDMTECFHMVTSRPARLMNLADYGL
EAGKAADFVIIDSSSPRAAVAELSPVLAAFKGGRRTLARERAKLHFPGCGCGQ