Protein Info for GFF3188 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: SanA protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF02698: DUF218" amino acids 42 to 160 (119 residues), 81.7 bits, see alignment E=2.3e-27

Best Hits

Swiss-Prot: 76% identical to YGJQ_ECOLI: Uncharacterized protein YgjQ (ygjQ) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to sec:SC3169)

Predicted SEED Role

"SanA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (210 amino acids)

>GFF3188 SanA protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
VACFLLVAAGVALFYSNWLIVNASQHLTWNDIQTVPARNVGLVLGAKPGNRYFTRRINTA
AALYHAGKVKWLLVSGDNGKKEYDEPSAMQQALMAKGVPEAAIFCDYAGFSTLDSVVRAR
KVFGESRITIISQAFHNQRAIWLAQQYGIDAIGVNAPDLNKRHGTYTRLREKLARVSAVL
DAKILHRQPKYLGAGVTIGADSAHGCPSRQ