Protein Info for GFF3178 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1035 transmembrane" amino acids 38 to 57 (20 residues), see Phobius details PF13018: ESPR" amino acids 1 to 46 (46 residues), 46.7 bits, see alignment (E = 5.3e-16) PF18883: AC_1" amino acids 541 to 657 (117 residues), 77.8 bits, see alignment E=9.8e-26 TIGR01414: outer membrane autotransporter barrel domain" amino acids 556 to 1035 (480 residues), 195 bits, see alignment E=1.2e-61 PF03797: Autotransporter" amino acids 764 to 1009 (246 residues), 131.5 bits, see alignment E=7.3e-42

Best Hits

KEGG orthology group: None (inferred from 73% identity to vpe:Varpa_5119)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1035 amino acids)

>GFF3178 hypothetical protein (Variovorax sp. SCN45)
MNKIFRTLWNPTLGTWVAAPETSRGHARSSSKGRDLRAVAMAALFLGAGPVLAAGGAGGQ
PVGETTLNGGSGGSNGSGGNGGLNDSTLNASGGSGGSSTPSGVTAGSAASIGSFGGATPG
SGGAAGSGSTTVSPGVIRGADGGAGQAQTGDANNGNGYGGGGGGGFQGATIGNNVGTSSN
SYTGGNGGAGGNGYWAAGGGGAGGYGSILNGPLGSYTATGSSTGGAGGSGGNAFSQSGGG
GSGGGGFYLNATTPGLTFGNTGTIAGGAGGAGGSELATPRDNASGGGGGAGGHGATLAGS
TVLVTNTGQITGGAGGAGGSAGGAAGGIGTPGGGGDGGIGLWSTGSGATITNTGGITGGA
GGAGGANSNGGASGANGAGGVGVMGSNLAITNSGSIAGGLGGDGVTRASAVEFTGGSNSL
TLNTGNVLTGAVAIDSGATASVIAGADGLSVGSALLLGGTGTFDTNGHNLSWTGPISGAS
GLVKNGAGTLTLSGTNTYAGSTSVNAGTLAAGAANTFSSASAFTVGSGATLDLAGHSQTV
ASLANSGTVSLVGSAPGTTLTVTGPWVGNGGTLRLGTALGDSSSASDRLILSGSTAIASG
TTNVQITNLGGLGALTSGNGIEVISAINGATTTAQTTKSAFSLAGGHVDAGAYQYRLYAA
DASGAGDNWYLRSTMTVDPVTGTPVTGGGTTSTGGSGGGSTSGGGVVVPTYRAEVPLYAA
LPEQLRQSNLAMLSNLHQRVGDDTGVSLSGGTNTATPEMGYRQAWARVISTDRTIGQSGT
VSPGSSGRLTGFQAGTDLWANPNWRVGVYVGELEGDMRVNGFVGGLQNSLAGTNSLHSEY
LGAYATWKNDSGLYVDGVLQAGRHRYTESPTLGFSSTGKGNSLLASVEVGQAFAIARDWV
IEPQLQLVRQRLDLGDSSIIGALVQQNNHDGWLARAGVRIKGEIATPAGRLQPYVRFNVY
RSSSGTDVANFIGPAGATPIATRTGGTSTELATGATLQLTQSASLYAEIGKLWSAGGDTR
IRSGIDASVGMKIRW