Protein Info for PS417_16230 in Pseudomonas simiae WCS417

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 288 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 99 to 123 (25 residues), see Phobius details amino acids 152 to 175 (24 residues), see Phobius details amino acids 207 to 225 (19 residues), see Phobius details amino acids 259 to 279 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 81 to 277 (197 residues), 62.9 bits, see alignment E=1.7e-21

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 99% identity to pfs:PFLU3744)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UJC2 at UniProt or InterPro

Protein Sequence (288 amino acids)

>PS417_16230 ABC transporter permease (Pseudomonas simiae WCS417)
MNKVQNNKAWWLVLPVFLLVAFSAVIPMMTVVNYSVQDIFDQSSRYFVGADWYKQVLLDP
RLHDSLLRQFIYSACVLLIEIPLGIAIALTMPTKGRWSSLVLIILAIPLLIPWNVVGTIW
QIFGRADIGLLGYSLNALGISYNYAANTMDAWVTVLVMDVWHWTSLVALLCYSGLRAIPD
VYYQAARIDRASPWAVFRHIQLPKMKSVLLIAVMLRFMDSFMIYTEPFVLTGGGPGNATT
FLSQTLTQMAVGQFDLGPAAAFSLVYFLIILLVSWLFYTAMTHSDANR