Protein Info for GFF3151 in Xanthobacter sp. DMC5

Annotation: Aliphatic sulfonates import ATP-binding protein SsuB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 PF00005: ABC_tran" amino acids 24 to 165 (142 residues), 113.8 bits, see alignment E=9.7e-37

Best Hits

KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 68% identity to mrd:Mrad2831_5825)

Predicted SEED Role

"ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component" in subsystem Alkanesulfonate assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (248 amino acids)

>GFF3151 Aliphatic sulfonates import ATP-binding protein SsuB (Xanthobacter sp. DMC5)
VSVVQLESVGKSFMRRDGEQLEVLRNIDLDVPERSIVALVGASGCGKSTLLNIVAGLIPP
DQGTVYLNGQKSSAFRDWRSMTYMFQEDRLFPWRTTAQNIALGLEAAGTPRAERRDRVMQ
VLELVGLEKFADSFPHELSGGMRSRAALGRSLVTEPSILLMDEPFSKLDPSIRTQMHDEV
LRIAALRQMSVLFVTHDVEEAVVLANKIVVLMPRPGRVKETREIDLPYPRNPLSPEVAEE
VRLLRLSL