Protein Info for GFF3150 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 70 to 92 (23 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 131 to 149 (19 residues), see Phobius details amino acids 172 to 193 (22 residues), see Phobius details amino acids 199 to 199 (1 residues), see Phobius details amino acids 228 to 249 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 84 to 242 (159 residues), 80.6 bits, see alignment E=6.1e-27

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 70% identity to mrd:Mrad2831_5824)

Predicted SEED Role

"ABC-type nitrate/sulfonate/bicarbonate transport system, permease component" in subsystem Alkanesulfonate assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (263 amino acids)

>GFF3150 hypothetical protein (Xanthobacter sp. DMC5)
MKRSPLQMTQDRRLRLIGLRLLLLIVVIGIWGIASLGAPAFILPSPRRVFGVWTQLVITP
GFWADFGITFYRIAMGFIFATVVGVVLGLLLGASRTLGDFFQPLLVVINTVSSSIWAIFA
LIWFGLSNWSTIFVVFMTAMPLILTNVWQGTSTVNRDFIELAQTFRMSRLQVLLKIYLPT
ILPQFFAGARLAFGFGARVSIVAEALGASSGIGYRLRQAADLVQTDQVFAWTLTLVILMI
FIEAVLLKPLETRLFAWRKPRPA