Protein Info for GFF3149 in Variovorax sp. SCN45

Annotation: RND efflux system, inner membrane transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1017 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 334 to 351 (18 residues), see Phobius details amino acids 358 to 378 (21 residues), see Phobius details amino acids 384 to 404 (21 residues), see Phobius details amino acids 444 to 465 (22 residues), see Phobius details amino acids 472 to 495 (24 residues), see Phobius details amino acids 518 to 544 (27 residues), see Phobius details amino acids 855 to 876 (22 residues), see Phobius details amino acids 882 to 904 (23 residues), see Phobius details amino acids 910 to 932 (23 residues), see Phobius details amino acids 959 to 980 (22 residues), see Phobius details amino acids 987 to 1013 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 13 to 1013 (1001 residues), 772.5 bits, see alignment E=6.3e-236 PF03176: MMPL" amino acids 823 to 1011 (189 residues), 23.2 bits, see alignment E=3.2e-09

Best Hits

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1017 amino acids)

>GFF3149 RND efflux system, inner membrane transporter (Variovorax sp. SCN45)
VKAAAWLSAHRRSVLFLVALLALAGALAAFRLPVSLFPTVQFPRVSLSLDAGDQPANQME
LQVTRPVEEAVRSIAGVTNVRSTTSRGSAEVSVSFDWGTDMAAATLQVNAAVAQIQAQLP
PGTRVAARRMDPTVFPIIAYSLTSASLSPTALRDLASYQLRPLLSGIAGVATVQVQGGAS
EEVRVTADPRRLQAYGLSMDDLSKALAAGNSLSATGRLEDHYKLYLVLADTRLAGVEDVR
QTVVANGANGVVRIGDVASVARSTTPEWQRVTADGRDAVLLSIRQQPGSNSVQIAADVKA
ALDGFAPQLPKDVHVANWYDQSELVTASASSVRDAILIGVVLAALVLVVFLRNLRVTAIA
VVVVPAVLAITIVVLQLLGMSFNIMTLGGMAAAVGLVIDDAIVMIEHIERRLAETADSSG
GAAGARLGVVDAAMEFLRPLAGSSAATLVIFAPLAFLSGVTGAFFKALSLTMASALAISF
LVTWLAVPLLAHFLLGRQHRPARDDRVTRWFKLRYRHWLVRCIARPWVLVVCVALLLGAG
GFAFRQVGTGFMPSMDEGGFILDYRTPPGTALSETDRLLRQVEAIVRATPEVQTYSRRTA
TGLGGGLSETNQGDFFIRLKPGRRRPVQEVMQDVRNRVEHQVPGVNVELAQLMEDLIGDL
TAVPQPVEVKLFAADPKLLPGAAEQVAQRIAKVPGLVEVRSGINPAGDAIAVHVDRVAAA
VEGLDPDQVTRALQTALAGSVATSYAQETKIVGVRVWTPAGSRATQAQLDDLPLRAPDGH
LVPLRRIATFETLSGQPQITRENLKSMIAVTGRIEGRDLGSVVQDVKQTLAAGGALPGGV
YYELGGLYQQQQIAFKGLMTVFAAAAALVFLLLLFLYESFAVAASILCTSLLSVSAVFIG
LWLTGIELNISAMMGMTMIIGIVTEVAVFYFSEQRQRHRPGRDLRRSLVGAGQFRARPIA
MTTLAAILTLLPLALAIGAGSEMQQPLAVAIISGLVVQLPLVLFFMPTLYAWIEKAR