Protein Info for GFF3132 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 273 transmembrane" amino acids 15 to 36 (22 residues), see Phobius details amino acids 42 to 69 (28 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details amino acids 113 to 132 (20 residues), see Phobius details amino acids 144 to 167 (24 residues), see Phobius details amino acids 185 to 207 (23 residues), see Phobius details amino acids 220 to 237 (18 residues), see Phobius details amino acids 243 to 265 (23 residues), see Phobius details PF01925: TauE" amino acids 19 to 262 (244 residues), 87.6 bits, see alignment E=5.3e-29

Best Hits

KEGG orthology group: None (inferred from 56% identity to xau:Xaut_3951)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (273 amino acids)

>GFF3132 hypothetical protein (Xanthobacter sp. DMC5)
MSFEPSAASMRRRLLHGSLAGLAIGTVGGLIGLGGAEIRLPVLIALGFEALPAIIINRVL
SLVVVAFALPSRAATIPFAEVAEHWRVIATLLTGSLAGAWTGATYATRFASHTLFRAIAV
MLVFTAIMLVLGDDPDLKHMAIDGTVRLVVGVLAGFIIGLAVALMGVSGGELLVPTLVLL
FALPVKLAGSVALAVSLPTLIVGFARFGRDNTVAVVRENLTFLGMMTAASMLGAFLGGQL
LGIVPASMLLPLLGAILVMSAWKIWRHGSASGQ