Protein Info for PS417_16010 in Pseudomonas simiae WCS417

Annotation: alkanesulfonate monooxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 360 PF00296: Bac_luciferase" amino acids 18 to 322 (305 residues), 235 bits, see alignment E=7.1e-74

Best Hits

Swiss-Prot: 39% identical to SSUD_SORC5: Alkanesulfonate monooxygenase (ssuD) from Sorangium cellulosum (strain So ce56)

KEGG orthology group: K04091, alkanesulfonate monooxygenase [EC: 1.14.14.5] (inferred from 97% identity to pfs:PFLU3682)

Predicted SEED Role

"Alkanesulfonate monooxygenase (EC 1.14.14.5)" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization (EC 1.14.14.5)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 1.14.14.5

Use Curated BLAST to search for 1.14.14.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TYE3 at UniProt or InterPro

Protein Sequence (360 amino acids)

>PS417_16010 alkanesulfonate monooxygenase (Pseudomonas simiae WCS417)
MSIEFIGYIGGHHASEIHPRSGPTLQPDYIETVARAHEQAGFDRALVAVHSNSPDSTLIA
SHAASVTQKLQFLIAHRPGFAQPTLAARQFATLDVFNGGRTAVHIITGGDDRELRADGSH
IGKDERYARTDEYLSVVRQEWTSEQPFDFKGTYYQVEGAHSTVKSPQQPHIPLYFGGASK
AAIEVAGKHADVYALWGETYEQVREIVTQVRAEAAKHGRTIRFSLSLRPILAETEELAWA
RADRILQQATELAEKNGFVRREPPNEGSRRLLAAAAQGSRLDKRLWTGIAGLLGAQGNST
SLVGTAEQVAEALVDYYDLGITTFLIRGFDPLNDAIDYGKRLIPLTRQLIAEREQAQQVA