Protein Info for PS417_15960 in Pseudomonas simiae WCS417

Annotation: multidrug transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1027 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details transmembrane" amino acids 337 to 356 (20 residues), see Phobius details amino acids 362 to 383 (22 residues), see Phobius details amino acids 389 to 413 (25 residues), see Phobius details amino acids 428 to 453 (26 residues), see Phobius details amino acids 465 to 487 (23 residues), see Phobius details amino acids 526 to 546 (21 residues), see Phobius details amino acids 858 to 877 (20 residues), see Phobius details amino acids 884 to 904 (21 residues), see Phobius details amino acids 910 to 930 (21 residues), see Phobius details amino acids 961 to 981 (21 residues), see Phobius details amino acids 987 to 1011 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 7 to 1009 (1003 residues), 453.8 bits, see alignment E=5.8e-140

Best Hits

KEGG orthology group: None (inferred from 62% identity to geb:GM18_4445)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UD95 at UniProt or InterPro

Protein Sequence (1027 amino acids)

>PS417_15960 multidrug transporter (Pseudomonas simiae WCS417)
MRGINLSELAVKHRAVTLFLIIAILAAGIFSFGKLGRAEDPSFTVKVMTITAAWPGATAQ
EMQEQVADRLEKRLQELDYYDRVETIAQPGFVSMRMTYKESTRPSEIQDLFYQTRKKLSD
EAAKLPQGVIGPFFNDEYSDVYFALYALEAEHLPHRQQVQMAEELRQGLLNLPGVKKVNI
LGEQAQRVFVEFSYERLATLGIKPDQIFAALAAQNAVAPSGFVETAGARAYIRIDGAFDS
LSLIENVPLEVNGRVLRIANVATVSRGYEDPPSYRIRHQGDPALMLGVIMEKHWNGLELD
KSLKAQEAKIQADLPLGVNFAKVSDQAKNIRLAVNEFMLKFFVALAVVMVISLLALGFRV
GLVVAAAVPLTLSVVFVIMLLTGREFDRITLGALIISLGLLVDDAIIAIEMMVVKLEEGF
DRIHAATFAWSSTAAPMLTGTLVTIIGFLPVGFARSGAGEYAGNIFWIVGFALISSWLVA
VVFTPYLGVKLLPQIKPVPGGHDAIYAGRYYQKLRSLVQACVRRRWLVTGLVVGAFVLCV
AGMGVVKKQFFPNSDRSELILEVYMPPGSAFKSTEAVAARLEKALLQEPQTTLVDTYVGG
GAPRFFLSLNPELPDPAFAKLIVQTPDSHARDALKLRMRERIAAGEFASARVRVTQLLFG
PPVPFPVVFRVSGPNLDVLRGVSEDVRKVVAANTLTKDAFLDWGERTSGYRLVLDQDRLR
LLGFTPNEVKSQLNALLSGNPITEVREGNRTVSVVARAQGGQREDLGNLNNMTLTNSAGT
SVPLAQVGHFQAVMEEPILKRRNRATTVEVRADIIDGVQPPDVEMAVYKDLQPLIAKLPA
GYQIDIGGPVEESAKANVALAALFPIMILLTLTVIMFQVRSFGVMFMVFATAPLGLIGAV
PTLLLFNQPFGFNAILGLIGIGGILMRNTLIFTDQIRQNQDHGMPIHAAIIEATVRRARP
VILTALAAALAFIPLTLSVFWSSLAYVLIGGVLVGTVLTLLFLPALCSLVLGREKTRVVE
TSHITAG