Protein Info for GFF3103 in Xanthobacter sp. DMC5

Annotation: Putative membrane protein insertion efficiency factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 122 PF01809: YidD" amino acids 30 to 93 (64 residues), 89 bits, see alignment E=7e-30 TIGR00278: putative membrane protein insertion efficiency factor" amino acids 33 to 96 (64 residues), 72.6 bits, see alignment E=9.1e-25

Best Hits

Swiss-Prot: 54% identical to YIDD_RHOP2: Putative membrane protein insertion efficiency factor (RPB_2181) from Rhodopseudomonas palustris (strain HaA2)

KEGG orthology group: K08998, hypothetical protein (inferred from 78% identity to xau:Xaut_1652)

Predicted SEED Role

"Protein YidD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (122 amino acids)

>GFF3103 Putative membrane protein insertion efficiency factor (Xanthobacter sp. DMC5)
MAADQGGLNETAGPVRRIGAQLARAPRLALRGLILVYRYTFSAFMGRQCRYLPTCSEYAE
EAVMRHGALPGAVMATARICRCNPWGGHGYDPVPKCLPTGGRWYKPWGYGIWRTPKEPDA
EG