Protein Info for GFF3103 in Sphingobium sp. HT1-2

Annotation: DNA polymerase-like protein PA0670

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 PF11799: IMS_C" amino acids 206 to 314 (109 residues), 22.7 bits, see alignment E=5.8e-09

Best Hits

KEGG orthology group: K14161, protein ImuB (inferred from 84% identity to sch:Sphch_0023)

Predicted SEED Role

"DNA polymerase-like protein PA0670" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (485 amino acids)

>GFF3103 DNA polymerase-like protein PA0670 (Sphingobium sp. HT1-2)
VVVENVRGAMRLATLDADALAAGLTPGMTLADARAREPELRVFEADPHGDQDWLERLCDG
CARYTPNAALDSGHGLMLDISGCAHLWDGEAELAQAATDRLERHGMRVRHAIAASPEAAH
ALARFPAAPAPDEDAAVRRLPVEALELEAESAVALRRAGLRTVGDLAARPAAALAARFGE
EAVDALHALLGLGHRPLAPRRPRPAIRVERRFAEPMGSSAHAIKVVAEMAAEAGEQLAER
GQGGRRFEAVFFRSDGLAFPIRVETSLPIRDAPAIMRLFQERIDSLSDPLDPGFGFDMLR
LTVPRADPMAPTQLALEGGEARKSEGVEALVDRLSIRAGRARIQRLEPRDSHIPEQAQLA
LPAVEHRAPEGWAPVGEPSDPPMRPLHLFDPPQPIDVIAEVPDGPPHRFRWRRTLHEVTR
FEGPERIAPEWWQAKDGAIEGESTGRTRDYYRVEDARGRRYWIFRHGLYGAETVHPGWYI
HGLFA