Protein Info for PS417_15860 in Pseudomonas simiae WCS417

Annotation: chromate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 85 to 106 (22 residues), see Phobius details amino acids 116 to 137 (22 residues), see Phobius details amino acids 149 to 181 (33 residues), see Phobius details amino acids 202 to 222 (21 residues), see Phobius details amino acids 233 to 253 (21 residues), see Phobius details amino acids 265 to 287 (23 residues), see Phobius details amino acids 298 to 322 (25 residues), see Phobius details amino acids 334 to 354 (21 residues), see Phobius details amino acids 367 to 396 (30 residues), see Phobius details PF02417: Chromate_transp" amino acids 12 to 178 (167 residues), 138.7 bits, see alignment E=1e-44 amino acids 231 to 394 (164 residues), 133.9 bits, see alignment E=2.9e-43 TIGR00937: chromate efflux transporter" amino acids 18 to 394 (377 residues), 343.3 bits, see alignment E=1.3e-106

Best Hits

KEGG orthology group: K07240, chromate transporter (inferred from 80% identity to put:PT7_1087)

Predicted SEED Role

"Chromate transport protein ChrA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U4R5 at UniProt or InterPro

Protein Sequence (401 amino acids)

>PS417_15860 chromate transporter (Pseudomonas simiae WCS417)
MTDTRQTDRRHWTVFLIFLRLGLTSFGGPIAHLGYFRDEFVVRRQWLSERSYADLVALCQ
FLPGPASSQVGIALGLSRSGYGGALAAWMGFTLPSAIALILFALGIARYGDVIPVGVLHG
LKVVAVAVVAQAVWGMARNLCPDTPRRSIMTAATCFVLLVPSALGQVGVIAMGAIIGLCL
FKPEPSEARDPLPIRIRRRAGMFWLVLFCALLLGLPLLATWFPSQMLSRVDAFYRAGSLV
FGGGHVVLPLLQAEVVPTGWVGNDAFLAGYGAAQAIPGPLFTFAAFLGASMNQAPNGWLG
GLVCLLAIFAPSFLLVLGALPFWERLRHNIRTQAALMGINAAVVGVLLAALYQPVWTSAI
HAPQDFALALVALVALMFCKVAPWLVVLGSGVMGGLLSIAL