Protein Info for GFF3097 in Xanthobacter sp. DMC5

Annotation: putative NTE family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 359 transmembrane" amino acids 85 to 103 (19 residues), see Phobius details amino acids 121 to 138 (18 residues), see Phobius details PF01734: Patatin" amino acids 59 to 218 (160 residues), 113.9 bits, see alignment E=5.6e-37

Best Hits

KEGG orthology group: K07001, (no description) (inferred from 77% identity to xau:Xaut_1647)

Predicted SEED Role

"UPF0028 protein YchK"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (359 amino acids)

>GFF3097 putative NTE family protein (Xanthobacter sp. DMC5)
MFQSLHWRSGPTAAAAPKTAASQIPDSAPQSGEAGPPDLGTPAHAATRTSVPNGPAIGLA
LGGGAARGFAHIGVLKALDRAGIRPTVVAGTSIGAVVGGIWAAGKLDTLEDWALSLTKRN
VLGLLDFNLGAAGLIGGRRLVELMRRNVGGLSIEDLPIVFAAIATELGTGHEIWLTRGDF
VDAIRASYALPGIFTPVKVGGRWLMDGALVNPVPVSAARAMGARMVIAVNLNADVFGRGT
VIQDHGGVVERVAEMAVAEKKDGLAGILSPDRLRRQFFAGPSGDGPRGLTTVMIDAFNIT
QDRIARSRLAGDPPDVMLSPKLGRIGLFEFQRAKEAIAAGMETTERALEDITSTMVALG