Protein Info for PS417_15845 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 43 to 75 (33 residues), see Phobius details amino acids 91 to 122 (32 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details amino acids 167 to 190 (24 residues), see Phobius details amino acids 197 to 219 (23 residues), see Phobius details amino acids 231 to 254 (24 residues), see Phobius details amino acids 263 to 284 (22 residues), see Phobius details amino acids 303 to 323 (21 residues), see Phobius details amino acids 362 to 370 (9 residues), see Phobius details amino acids 390 to 410 (21 residues), see Phobius details PF02308: MgtC" amino acids 12 to 128 (117 residues), 46.1 bits, see alignment E=6.2e-16 PF13194: DUF4010" amino acids 177 to 386 (210 residues), 140.6 bits, see alignment E=6.1e-45

Best Hits

KEGG orthology group: None (inferred from 74% identity to pfo:Pfl01_3343)

Predicted SEED Role

"MgtC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UM97 at UniProt or InterPro

Protein Sequence (412 amino acids)

>PS417_15845 membrane protein (Pseudomonas simiae WCS417)
MIETIGMAGAAAALGIGMLIGLERERHKGTGDTRDSAGLRTFAITALLGYAAMQVGGALL
VGMVAISLTALATVAYWRSLSDDPGVTSEVALLTVLILGALCSTAPELAVAMGVVAAGLL
TYRETLHHFAKSQLTEPEMRDGLVLLITALVVLPLLPDRYIGPYAALNLRTVCSLTVLLM
LVGAAGHIAVRTLGTRYGYAISAIASGFASSTVTIASMGHRVATEPGNIRALSAAAILSN
LATVIQVGLIFGLVDPALLRSIWGPLACGFAVTGLYGACLMFPVQSGGANGPIKVGGAFD
LKLALIVTLTMTGITLVSSAMLSHFGQVGIMLTATLTGFADAHSSTASIASLAKAGLLPF
DAIVGPALVAVSSNSLSKCLMAWVSGGRRFAAYVIPGQVLLTLAMWAGTLLH