Protein Info for GFF3097 in Sphingobium sp. HT1-2

Annotation: Inner membrane component of TAM transport system

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1406 transmembrane" amino acids 28 to 50 (23 residues), see Phobius details PF04357: TamB" amino acids 1056 to 1406 (351 residues), 214.5 bits, see alignment E=1.5e-67

Best Hits

KEGG orthology group: K09800, hypothetical protein (inferred from 82% identity to sch:Sphch_1784)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1406 amino acids)

>GFF3097 Inner membrane component of TAM transport system (Sphingobium sp. HT1-2)
MAENTPPPAPEATETVVIRQGRPLWQKIAIGLAGLIVGLVVLVAGLLLFLDTQPGKSFLI
KQIAALKMESGMGIEVGRIEGSIYSDMTIHDLILRDPKGVFAVSPRVHVVWRPFRYLQNH
ISVQNLESPLVVLARSPQFNQTPTDPNAPILPDLDIDVDQMRLDRFLLAKPVIGQKREIA
IDSIVHIADGRAQLSANAVVDSGDRLEAKLDAVPAQNRLAMSGTLTAPKGGVIAAMSGLP
DGMTASLDGKGTWQAWNGKLIATTPRGELANIALAARDGSFTAKGPLRPGLVYGDIADRL
TRPQLDVDLFAGLNERRVNLKGSLRSPAMSADAQGLVDLGKSTFSALKINAALLQPGAFM
DKVKGKDVRASIILDGPMATPFIDYDISATSLAFDATGIENLKASGRAVIDADRIRIPVN
ATAKRVTGLNAAAGGLMTNLRVKGDFAYAGGKLISDNLKLDSDKIDATAIILADLDNAIY
RGALKGRVNDYRIDGVGIVNLNTDVKLIPGPKGGFGLSGMFGVRTARWENASVRDFLGGN
AVMSGRIGMTPEGRFTLAGLKGAAPNFQIKSGSGSYDTNGQLAFDTEAYSKQYGPLFLTV
RGTADRPQAVLRAPRPNVGVQLTDVVAKLNGEPAGYRLDATGGSPYGPFFANVLIRTAQG
PLTIDVTKARFAGVDMNGRIQQSNAGPFTGQLAMNGSGITGAVKLNAVGKLQGVDVNATA
SNAKLPGEADIVIGRAVVTASMLLSDQPKVIADVQMANAAYGDYVVRKARAKLDYQGGRG
KAQLVADGSSGVPFSVAVNAALRPDLYAVALQGKASNVDFRLNQPAIIRAEKTGYRLEPV
SLVLPQGKVDLAGHFGTDTALQARFKDFDLAIANVANPGLGIGGKATGMVDYSQSGTAFP
TATTRLAISDFRRSSLAAVSDAVSMNVEGKLSAAGGDMRGLIRRGNSTIGRFVATMAPPG
PGANWSEQLMAAPLGGGIRYAGPADVLFSFAGLADQRLSGGIAVAADFGGRLTAPQLNGL
VRANALTYDNTSFGTRVTQMKLDGRFTNDRLDIRDFSGRAGNGTVQASGTVGLAADSGFP
MNIAVKMDHARLARSEAITSVVSGTLAITNSAENGGLIKGDLSLPETRYRVAWQGGTEIR
ELQGVRRKGEGQDVLAQRIADRKAAAASPTNWKLDIRLRADNQIYVTGMGLDSEWKTDMR
VTGTATKPRVSGKIEVIRGRYSFSGHQFDLDQGVITFNGDMMNPTLAIKALTEIDDVSAG
IAVAGTAQQPDITFVSTPTLPQDEILSRILFGDNVANLSATQAIQLAAALNGLRGGSGGL
NPMGKLQGASGLDRIGIVGGDEDTGRGTSLAVGQHISNNIYVEVVTDSKGFTATQLEVAL
SKTLSILSKTGTNAGSSAALRYSRDY