Protein Info for GFF3096 in Sphingobium sp. HT1-2

Annotation: Outer membrane component of TAM transport system

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 719 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF01103: Omp85" amino acids 406 to 719 (314 residues), 152.8 bits, see alignment E=1.8e-48

Best Hits

KEGG orthology group: K07278, outer membrane protein (inferred from 74% identity to sjp:SJA_C1-32140)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (719 amino acids)

>GFF3096 Outer membrane component of TAM transport system (Sphingobium sp. HT1-2)
MKKRQARYVRHALGMIMAAASPLPLMAQTVPASAPGTTAPADEEQILPDDEFNARLPGAG
SVDDKASNGGTDSKAPLPSIDDWLDQQMPAQGSAPASGTAPATGAELPPATEPPVETELA
QPLPALDSVTVPENVADDDSDEKTPEVRYATQLDGFGKTGLEDEFRAASALVDGKGKAET
ASMVQQRAQADEQLAVRLFHSEGYYDATALASLDQQQDGTLKAILSVTPGKRYKINEIVI
HAPETIPPGLIRDSLTLKTGDYIVATAVEAAEANVALKLPEHGYAFARIGDRDILLDPAT
VTGDYTLPVEPGPRGTFRTITTSGEKQAFGADHMAVIARFDKGDLYDSRKVDDLRKALVA
TGLFASVAVDPVQTGEPGPDGTEYVDLHVDQEAGPARRLAGELGYGTGQGFRAEGSWTHR
NLFPPEGALIASVIAGTQEQGVSGTFRRSNAGKRDKTFQAGAGVNHQKYDAYEAFTLGLN
ASWSRQSTPIFQKRWTYTYGGEILLSNENTTIDESGENKRLTYFIGALPVQVGYDRSNDL
LNPTSGFRANLRISPEASLQGNVSPYVRASFDLAGYYPISDSFVLAARTKIGTINGVARD
DVAPSRRIYAGGGGSVRGYGYQELGPKDANNDPIGGRSVNEFAVEGRYRFGNYGVVAFVD
AGQVYESQIPQFSDIRYGVGLGGRFYTNFGPFRADIAMPINRQPGESKFALYIGIGQAF