Protein Info for GFF3095 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Annotation: Uronate isomerase (EC 5.3.1.12)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 100% identical to UXAC_SALG2: Uronate isomerase (uxaC) from Salmonella gallinarum (strain 287/91 / NCTC 13346)
KEGG orthology group: K01812, glucuronate isomerase [EC: 5.3.1.12] (inferred from 99% identity to spt:SPA3005)MetaCyc: 67% identical to D-glucoronate/D-galacturonate isomerase (Escherichia coli K-12 substr. MG1655)
Glucuronate isomerase. [EC: 5.3.1.12]; 5.3.1.12 [EC: 5.3.1.12]
Predicted SEED Role
"Uronate isomerase (EC 5.3.1.12)" in subsystem D-Galacturonate and D-Glucuronate Utilization (EC 5.3.1.12)
MetaCyc Pathways
- superpathway of β-D-glucuronosides degradation (6/7 steps found)
- superpathway of hexuronide and hexuronate degradation (8/10 steps found)
- D-galacturonate degradation I (4/5 steps found)
- β-D-glucuronide and D-glucuronate degradation (2/3 steps found)
- pectin degradation II (3/5 steps found)
- superpathway of microbial D-galacturonate and D-glucuronate degradation (17/31 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 5.3.1.12
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (470 amino acids)
>GFF3095 Uronate isomerase (EC 5.3.1.12) (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868) MATFMTEDFLLKNDIARTLYHKYAAPMPIYDFHCHLSPQEIADDRRFDNLGQIWLEGDHY KWRALRSAGVDESLITGKETSDYEKYMAWANTVPKTLGNPLYHWTHLELRRPFGITGTLF GPDTAESIWTQCNEKLATPAFSARGIMQQMNVRMVGTTDDPIDSLEYHRQIAADDSIDIE VAPSWRPDKVFKIELDGFVDYLRKLEAAADVSITRFDDLRQALTRRLDHFAACGCRASDH GIETLRFAPVPDDAQLDAILGKRLAGETLSELEIAQFTTAVLVWLGRQYAARGWVMQLHI GAIRNNNTRMFRLLGPDTGFDSIGDNNISWALSRLLDSMDVTNELPKTILYCLNPRDNEV LATMIGNFQGPGIAGKVQFGSGWWFNDQKDGMLRQLEQLSQMGLLSQFVGMLTDSRSFLS YTRHEYFRRILCNLLGQWAQDGEIPDDEAMLSRMVQDICFNNAQRYFTIK