Protein Info for GFF3076 in Sphingobium sp. HT1-2

Annotation: Integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 320 transmembrane" amino acids 9 to 30 (22 residues), see Phobius details amino acids 43 to 62 (20 residues), see Phobius details amino acids 73 to 92 (20 residues), see Phobius details amino acids 98 to 119 (22 residues), see Phobius details amino acids 131 to 150 (20 residues), see Phobius details amino acids 162 to 185 (24 residues), see Phobius details amino acids 197 to 219 (23 residues), see Phobius details amino acids 232 to 251 (20 residues), see Phobius details amino acids 258 to 280 (23 residues), see Phobius details amino acids 287 to 307 (21 residues), see Phobius details PF00892: EamA" amino acids 12 to 145 (134 residues), 28.7 bits, see alignment E=7.3e-11

Best Hits

KEGG orthology group: None (inferred from 64% identity to swi:Swit_0727)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (320 amino acids)

>GFF3076 Integral membrane protein (Sphingobium sp. HT1-2)
MNQSRASGAILAGIFCGMGAGALWGLVFLAPEIVPGFSPLEQAIGRYLAYGLMSVLLVAP
RWRAIRPLLTPRILWALAWLALAGNLFYYVLLVSAVQMGGIAMTSLVVGFLPVAVTIVGS
RQAGAVPLRHLAPSLLLCVAGALCIGWQAIVMPGGGAVATRIIGFACAVGALISWTAFAI
GNAHWLRRMDGITSQDWNFLIGLATGAQALLFLPLVPWLGSGRHDAADWTRFAAVVIAVA
LFASIVGNALWNRMTRLLPLTMVGQMILFETGFALLYGFVWEARLPTLLEGTAFVLVILS
VLSCIAAHRRPVPAEASIAA