Protein Info for GFF3068 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 67 to 86 (20 residues), see Phobius details PF12275: DUF3616" amino acids 163 to 267 (105 residues), 33.7 bits, see alignment E=1.4e-12

Best Hits

KEGG orthology group: None (inferred from 60% identity to xau:Xaut_3228)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (361 amino acids)

>GFF3068 hypothetical protein (Xanthobacter sp. DMC5)
MRIIASLALLLISTGIARAEIVRSPTTWRVDPAPFRTDKDANTSISGAACATGTSTCLVV
NDETRFAQFFILGTGTISPGAVIGLLPKKVDGAKMKELDAEGAAYAPPRTPGAPGHFYVT
GSHGASRENGVQPSRFFLLRFPVDAATGQPTFAFGAGDPPREIQHTSALRTALARLPEIG
AYAEKPLDENGLTVEGFAILDGEALFGLRGPCIGGRAFVVRAPLDPLFSREPVAARASSL
AMGDNTGIRDLAAVQGGVLILTGRSNDARRGKTYSCERPVSDKADDAMAGVPDAKVWLWS
GRDADTPLLLGTLPGVSTEMKAETLLVLAEDASSYRILVWFDGLPDGAPLEFSVTRPPAG
K