Protein Info for GFF3064 in Variovorax sp. SCN45

Annotation: Exodeoxyribonuclease III (EC 3.1.11.2)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 261 TIGR00633: exodeoxyribonuclease III (xth)" amino acids 1 to 258 (258 residues), 254.3 bits, see alignment E=1.3e-79 TIGR00195: exodeoxyribonuclease III" amino acids 1 to 256 (256 residues), 265 bits, see alignment E=7.5e-83 PF03372: Exo_endo_phos" amino acids 4 to 250 (247 residues), 115.7 bits, see alignment E=1.3e-37

Best Hits

KEGG orthology group: K01142, exodeoxyribonuclease III [EC: 3.1.11.2] (inferred from 94% identity to vpe:Varpa_1801)

Predicted SEED Role

"Exodeoxyribonuclease III (EC 3.1.11.2)" in subsystem DNA repair, bacterial (EC 3.1.11.2)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.2

Use Curated BLAST to search for 3.1.11.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (261 amino acids)

>GFF3064 Exodeoxyribonuclease III (EC 3.1.11.2) (Variovorax sp. SCN45)
MKIATWNVNSLTARLQHVLDWLIANPVDVLCLQELKMTDDKFPLEVLKSAGYEAAVFGQK
TYNGVAILSLSPMRDVVKNIGGFTDDQSRVIAATVDTPSGPLRVVNGYFVNGQAPGSDKF
EYKMKWLDALRDWLRQEMAANPNLVLLGDFNITPEDRDSFDPVGLKETIHHTTEERNHFK
ALLDLGLTDSFRMFEQPEKSFSWWDYRMLGYQKNRGLRIDHILVSEPLVPRVKGCVVDRV
PRKWEKPSDHAPVVLDLDQGA