Protein Info for GFF306 in Sphingobium sp. HT1-2

Annotation: DedA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 222 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 52 to 71 (20 residues), see Phobius details amino acids 111 to 133 (23 residues), see Phobius details amino acids 160 to 181 (22 residues), see Phobius details amino acids 193 to 213 (21 residues), see Phobius details PF09335: VTT_dom" amino acids 30 to 142 (113 residues), 51 bits, see alignment E=1e-17

Best Hits

Predicted SEED Role

"FIG139438: lipoprotein B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (222 amino acids)

>GFF306 DedA (Sphingobium sp. HT1-2)
MTDWVLRLIDAGGYWGIFLLMILENVFPPIPSELIMGIGGIRVGQGRMAMEWLLLAGTLG
TTIGNYFWYLVGHILGFGRLKPLVDRFGRWATLEWRDVEALDRLFGKYGQIVVFVFRFMP
AFRTMISLPAGLFRMGHVRFQARTDVKGRALHLLNTHGRFLLFTTAGAFIWNVVLAYGGY
FLGRRFSGEIDKWLGPITTACVVAAVVFYLYRLATWKPRAER