Protein Info for PS417_15650 in Pseudomonas simiae WCS417

Annotation: glutamine amidotransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 PF01965: DJ-1_PfpI" amino acids 8 to 182 (175 residues), 136.6 bits, see alignment E=3.6e-44 TIGR01382: intracellular protease, PfpI family" amino acids 11 to 184 (174 residues), 181.1 bits, see alignment E=6.3e-58

Best Hits

KEGG orthology group: K05520, protease I [EC: 3.2.-.-] (inferred from 92% identity to pfs:PFLU3615)

Predicted SEED Role

"ThiJ/PfpI family protein"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.-.-

Use Curated BLAST to search for 3.2.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TY90 at UniProt or InterPro

Protein Sequence (186 amino acids)

>PS417_15650 glutamine amidotransferase (Pseudomonas simiae WCS417)
MSSNLNGKKILVITSNTGIERDELLKPLAALRGYGATVTHGSSTGGITQTFVGDTEKDTT
VESDAKLSELSGSEFDALVIPGGTVNADTLRQDAAAQKLINEFVKAGKTVAAICHGPWAL
IDAGVIKGKTLTSYKSVRIDLENAGAAGWVDEEVKVCKANGWTLITSRTPDDLPAFNEAI
AKALAG