Protein Info for GFF3053 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 59 to 79 (21 residues), see Phobius details amino acids 125 to 141 (17 residues), see Phobius details amino acids 146 to 165 (20 residues), see Phobius details PF10755: DUF2585" amino acids 27 to 188 (162 residues), 275.7 bits, see alignment E=6.1e-87

Best Hits

Swiss-Prot: 63% identical to Y3951_RHIEC: UPF0314 protein RHE_CH03951 (RHE_CH03951) from Rhizobium etli (strain CFN 42 / ATCC 51251)

KEGG orthology group: None (inferred from 65% identity to agr:AGROH133_09003)

Predicted SEED Role

"Intracellular septation protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (190 amino acids)

>GFF3053 hypothetical protein (Sphingobium sp. HT1-2)
LARSRKGMKQRGFILALLIALGAAAILYLMGRPPICTCGTIELWHGPIDSGNSQHLSDWY
SLSHIIHGFLFYGATHLLMRRRPLGIRLSVAVAIEAAWEILENSPIIIDRYRTATIALGY
SGDSILNSMSDIGMMALGFLFASRAPVWLTVIVAIGFELLALAVIRDNLTLNVLMLAWPI
DAIKEWQGAL