Protein Info for GFF3033 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 502 transmembrane" amino acids 38 to 60 (23 residues), see Phobius details amino acids 184 to 204 (21 residues), see Phobius details PF16448: LapD_MoxY_N" amino acids 58 to 178 (121 residues), 26.4 bits, see alignment E=1.1e-09 PF00672: HAMP" amino acids 205 to 251 (47 residues), 20.2 bits, see alignment 1.3e-07 PF07730: HisKA_3" amino acids 272 to 343 (72 residues), 34.6 bits, see alignment E=4.5e-12 PF02518: HATPase_c" amino acids 387 to 476 (90 residues), 36.6 bits, see alignment E=1.1e-12

Best Hits

KEGG orthology group: None (inferred from 46% identity to sno:Snov_4186)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (502 amino acids)

>GFF3033 hypothetical protein (Xanthobacter sp. DMC5)
MSVHPATRASLPRGIAGAEDQAGVAEASVRRVSLRTRVLGAVLAINLVAAVVAGAVVVVN
ARVAAGREMVASVEMAENMVREVAERVASEQGTTLAAAFPPHLRHLRHVRISLEGPDGRP
AVLPADGAPVSGEAAPSWFARLIGVSQVTRRIDVVADGTLIGRVRIEGVPDDEVAEVWDD
VFDFASVALAVNFAILSALFVALGQVRRDLSRFRGALDELEHNGFACRVEPPRTRELAEV
AERFNAFAETLGAAREENAHLYARLVSLQEDERRQIAGDLHDELGPLMFGLKASADSLAR
LAATAPAENAERMVARAKSLIEIVERMQVANRRLLTRIRPAALDHVPLKDVLSSLVADFR
QHDPERRFALETGVLADHYEPSFDATVYRCAQEGVTNALKHGNARSVRIIVGEEGRRGAG
GMLRLVVADDGKGPPAIPSMGHGLSGMKERVRALGGSCRLERGNEGGARLFVELPIPLGH
STSASPSSAEGRRVRSGPGHPV