Protein Info for GFF3023 in Variovorax sp. SCN45

Annotation: C4-dicarboxylate transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 transmembrane" amino acids 7 to 33 (27 residues), see Phobius details amino acids 47 to 68 (22 residues), see Phobius details amino acids 79 to 102 (24 residues), see Phobius details amino acids 143 to 162 (20 residues), see Phobius details amino acids 169 to 185 (17 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details amino acids 237 to 259 (23 residues), see Phobius details amino acids 278 to 298 (21 residues), see Phobius details amino acids 310 to 336 (27 residues), see Phobius details amino acids 347 to 370 (24 residues), see Phobius details amino acids 373 to 394 (22 residues), see Phobius details amino acids 400 to 419 (20 residues), see Phobius details PF00375: SDF" amino acids 15 to 417 (403 residues), 199.1 bits, see alignment E=6.2e-63

Best Hits

KEGG orthology group: None (inferred from 74% identity to bge:BC1002_5456)

Predicted SEED Role

"Proton/sodium-glutamate symport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (424 amino acids)

>GFF3023 C4-dicarboxylate transport protein (Variovorax sp. SCN45)
MNSSKFYAFVLNPWVVIISLGAGVAFGMLAPALATTLGFVGDIYVDLLKMITLPFMVSAV
IFSLQRLFRDGGTASLLGRVALVFLAFSAFVAIAGAATLLILRPGENLPSTTMQTFGQIV
GGDLSASDTAMNLRGVDEVKKTASFADMLVSLVPANIFSALANGDTLKTLVFALLFGLAV
GHVPTRISDGLTQALETVYHACQTLMRWLSFPLPVVLFCMSAAQLGKTGIEPLRAMGAFV
VAFLVVSVLLLAVAAVIIWKRSNGTLGQTLNALRGPFALALATRSSATCMPIMIESLVTR
LGFARSRVELLVPLTVSLLRIGPVVYYVCATLFIAQIYGRSLSPVEIGIVLTSSVLAGFA
SAGMTGLVTVSLIGMTCTYLGLPFEAAFILFLAVDPVCDMLRTLVLVIGNTAAVAVVCPR
PLKI