Protein Info for GFF3023 in Sphingobium sp. HT1-2

Annotation: CzcABC family efflux RND transporter, transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1064 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 335 to 354 (20 residues), see Phobius details amino acids 361 to 381 (21 residues), see Phobius details amino acids 387 to 408 (22 residues), see Phobius details amino acids 429 to 452 (24 residues), see Phobius details amino acids 458 to 479 (22 residues), see Phobius details amino acids 545 to 564 (20 residues), see Phobius details amino acids 887 to 908 (22 residues), see Phobius details amino acids 917 to 935 (19 residues), see Phobius details amino acids 943 to 967 (25 residues), see Phobius details amino acids 989 to 1010 (22 residues), see Phobius details amino acids 1023 to 1046 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1047 (1044 residues), 696.2 bits, see alignment E=3.4e-213

Best Hits

KEGG orthology group: None (inferred from 55% identity to bac:BamMC406_4189)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1064 amino acids)

>GFF3023 CzcABC family efflux RND transporter, transmembrane protein (Sphingobium sp. HT1-2)
MIGIVKVALHRPLTFIVMAILIAIVGILSAARTPVDMFPNIRIPVIAVAFQYAGLSPEDM
SGRIVGPYERVLTTTVNDIEHIESQSLQGIGVIKIYFQPGADIRTATAQVTSISQTVLRQ
MPPGVTPPLILNYSASTVPILQLALSGKGLSEQQLFDLGQNQIRPQLVTIPGLAMPFPSG
GKQRQVQIDLNPLALQSKGLSAQDVGNAIAAQNQINPAGFVKIGATQYSVRLNNAPESIA
ALNDLPVKVVNGATIYMRDVAYVRDGAGPQQNIVHVEGSRSALLTVLKNGSTSTLAIVDG
VKQALPKISATLPDTLKILPIGDQSLFVKAAVEGVIHEGAIAAALTSLMILLFLGSWRST
VIIALSIPLAILAAIAALAMFGQTLNVMTLGGLALAVGILVDDATVTIENINWHLEQGKG
VIEAILDGAAQIVTPAFVSLLCICIVFVPMFFLPGVAGFLFVPMALSVVFAMIASFILSR
TLVPTMAMYLLKPHHVGDEDEHLAGTATSRNPLVSFQRGFEYRFEKVRTSYVGMLHRALG
ARKPFLIGFMAVVVLSFGLLPFLGSNFFPSVDSGQIAMHIRVPVGARIEDTAARFDQIGR
EVRKIIPADQLGSITDNIGLPVSSINTVYNNSGTIGPQDGDMLIALNKGHRPTDEFVSQL
RRELPRRFPGTTFAFLPADITSQILNFGAPAPIDIQIAGKDAEANRAYAQKLLAKITTIP
GLADARIQQPGRAPQLDVDVDRSRVGQYGLTERDVTTSLASSLAGTSQTAPVFFVNPQNG
VQYPVVAQAPEYLVGSMSDLSNVPVSGAGASAVQPLGGLATIVRSNTVPVVSHYNIAPVL
DIFATTQGRDLGAVAGDIDRAIKSLKAEEPKGSTITIRGQYATMNTAFSGLGFGLAGAII
LIYLLIVVNFQSWVDPFVIITALPAALAGIIWMLFMTGTTLSVPALTGAIMCMGVATANS
ILVVSFARERLAELGDATKAALEAGMVRFRPVLMTALAMIIGMGPMALGLGEGGEQNAPL
GRAVVGGLICATIATLFFVPTVFAFVHSRKAAKANNMEMQPSHV