Protein Info for GFF302 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Homolog of fucose/glucose/galactose permeases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 58 to 79 (22 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 111 to 132 (22 residues), see Phobius details amino acids 154 to 172 (19 residues), see Phobius details amino acids 205 to 224 (20 residues), see Phobius details amino acids 257 to 279 (23 residues), see Phobius details amino acids 291 to 311 (21 residues), see Phobius details amino acids 319 to 336 (18 residues), see Phobius details amino acids 342 to 363 (22 residues), see Phobius details amino acids 375 to 397 (23 residues), see Phobius details amino acids 403 to 423 (21 residues), see Phobius details TIGR00885: L-fucose:H+ symporter permease" amino acids 21 to 424 (404 residues), 323.2 bits, see alignment E=1.5e-100 PF07690: MFS_1" amino acids 43 to 275 (233 residues), 44 bits, see alignment E=7.5e-16 amino acids 260 to 434 (175 residues), 39.7 bits, see alignment E=1.5e-14

Best Hits

KEGG orthology group: K02429, MFS transporter, FHS family, L-fucose permease (inferred from 100% identity to sei:SPC_3873)

Predicted SEED Role

"Homolog of fucose/glucose/galactose permeases" in subsystem Hexose Phosphate Uptake System

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (438 amino acids)

>GFF302 Homolog of fucose/glucose/galactose permeases (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MNDKNIVQMPDGYLNKTPLFQFILLSCLFPLWGCAAALNDILITQFKSVFSLSNFASALV
QSAFYGGYFLIAIPASLVIKKTSYKVAILIGLTLYIVGCTLFFPASHMATYTMFLAAIFA
IAIGLSFLETAANTYSSMIGPKAYATLRLNISQTFYPIGAAAGILLGKYLVFSEGESLEK
QMAGMNAEQVHNFKVLMLENTLEPYKYMIMVLVVVMVLFLLTRFPTCKVAQTASHKRPSA
LDTLRYLASNARFRRGIVAQFLYVGMQVAVWSFTIRLALELGDINERDASTFMVYSFACF
FIGKFIANILMTRFNPEKVLILYSVIGALFLAYVALAPSFSAVYVAVLVSVLFGPCWATI
YAGTLDTVDNEHTEMAGAVIVMAIVGAAVVPAIQGYVADMFHSLQLSFLVSMLCFVYVGV
YFWRESKVRGNLAEVAAS