Protein Info for GFF3010 in Sphingobium sp. HT1-2

Annotation: FIG00986726: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (729 amino acids)

>GFF3010 FIG00986726: hypothetical protein (Sphingobium sp. HT1-2)
MTADFDPADFDGDSALDTDMAGFDIDPKLRPVRHLPLLVQASGRYNFVRSPRFPMPRALP
GAVDRFDDDVNALTLYTREELRLDVDGRYPQMTVSGTRAGPLGPVVSWVAALTRTGANHY
SGQIWFKDGQVGAIPHTQISLKVTKSLLAAQRKVEATFSGGGAASFVRTYQFSSASFRPA
EFEYDTVAGATRVTEIGTHDHPNHPATMASETLSLDTVYRRAGFNVSDAPGNGAIPLGAA
GADQRWTDQEMHDAMQIYWSRFADKPQWSLWVLFASLHVQGSSLGGIMFDDIGSNHRQGT
AIFTDAFIAHPPAGDADPDAWVRRMRFWTAAHEVGHAFNLAHSWQKSLGTPWIPLADDPE
ARSFMNYPYAVAGGQAAFFADFDFRFSDSELLFMRHTPERFVQMGNADWFDQHGFSQVAL
DPNEEFGLTLSVNARDNRLPYLLPPVVEMALVNRSGRPKLASAARLSERAGLTLIISKDG
RPARQWSPYSRHCGESLEIILGQGEALYDSVLVGAGRNGWDMAEPGRYTIQAMLVVDGRA
VISNPLEVKVEPPESREEERLAQDIFTPEVGQVLAVNGTRGVQSAVDALRAATRMRQHPL
ARQAAIALAGPLADEYKLLQVDERARPGETPAVAARRIEVYDADLKEARHLLAIATEGSA
DAAVNAVGHTRFLREAGKLARALDGGVAPALRQTGLGFDAVRAGDVIGGFNLGQDMQRML
ALKANGLSI